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Andrew McPherson Selected Research

RNA (Ribonucleic Acid)

1/2023Exploiting allele-specific transcriptional effects of subclonal copy number alterations for genotype-phenotype mapping in cancer cell populations.
12/2019clonealign: statistical integration of independent single-cell RNA and DNA sequencing data from human cancers.
10/2019Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses.
1/2018Computational identification of micro-structural variations and their proteogenomic consequences in cancer.
8/2014Heterogeneity in the inter-tumor transcriptome of high risk prostate cancer.
7/2012From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer.
5/2011deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data.
3/2011MHC class II transactivator CIITA is a recurrent gene fusion partner in lymphoid cancers.
1/2011Genome-wide identification of human microRNAs located in leukemia-associated genomic alterations.

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Andrew McPherson Research Topics

Disease

20Neoplasms (Cancer)
05/2024 - 02/2007
4Acute Myeloid Leukemia (Acute Myelogenous Leukemia)
12/2023 - 01/2011
3Breast Neoplasms (Breast Cancer)
05/2024 - 01/2018
2Ovarian Neoplasms (Ovarian Cancer)
03/2024 - 01/2022
2Chromothripsis
11/2023 - 12/2012
2Triple Negative Breast Neoplasms
01/2021 - 04/2012
2Prostatic Neoplasms (Prostate Cancer)
05/2012 - 06/2011
2Macular Degeneration (Age-Related Maculopathy)
01/2009 - 03/2008
1Noninfiltrating Intraductal Carcinoma (DCIS)
05/2024
1Digital Dermatitis
02/2024
1Multiple Myeloma
11/2023
1Rupture
07/2023
1Ascites
12/2021
1Pleural Effusion (Pleural Effusions)
12/2021
1Hepatitis C
03/2013
1Neoplasm Metastasis (Metastasis)
07/2012
1Adenocarcinoma
05/2012
1Endometrial Stromal Sarcoma
01/2012
1Sarcoma (Soft Tissue Sarcoma)
01/2012
1Hodgkin Disease (Hodgkin's Disease)
03/2011
1Leukemia
01/2011
1Edema (Dropsy)
03/2008
1Choroidal Neovascularization
03/2008

Drug/Important Bio-Agent (IBA)

9RNA (Ribonucleic Acid)IBA
01/2023 - 01/2011
7DNA (Deoxyribonucleic Acid)IBA
05/2024 - 07/2012
2Phenobarbital (Luminal)FDA Link
05/2024 - 05/2012
2Hormones (Hormone)IBA
08/2014 - 05/2012
24- chloro- 3- (5- methyl- 3- ((4- (2- pyrrolidin- 1- ylethoxy)phenyl)amino)- 1,2,4- benzotriazin- 7- yl)phenolIBA
01/2009 - 03/2008
1Mitochondrial DNA (mtDNA)IBA
05/2024
1Proteins (Proteins, Gene)FDA Link
03/2024
17,7'- dimethoxy- (4,4'- bi- 1,3- benzodioxole)- 5,5'- dicarboxylic acid dimethyl ester (BDD)IBA
02/2024
1Melphalan (Alkeran)FDA LinkGeneric
11/2023
1PlatinumIBA
11/2023
1Histones (Histone)IBA
07/2023
1Hematoxylin (Haematoxylon)IBA
01/2022
1Eosine Yellowish-(YS) (Eosin)IBA
01/2022
1PhosphatidylserinesIBA
12/2021
1Immune Checkpoint InhibitorsIBA
12/2021
1Cisplatin (Platino)FDA LinkGeneric
01/2021
1Collagenases (Collagenase)FDA Link
10/2019
1Small Cytoplasmic RNAIBA
10/2019
1Peptide Hydrolases (Proteases)FDA Link
10/2019
1NucleotidesIBA
07/2015
1Illicit Drugs (Recreational Drugs)IBA
03/2013
1Progesterone Receptors (Progesterone Receptor)IBA
04/2012
1Oncogene Proteins (Oncogene Protein)IBA
01/2012
114-3-3 Proteins (14-3-3 Protein)IBA
01/2012
1Insulin-Like PeptidesIBA
09/2011
1phosphatidylinositol receptorsIBA
09/2011
1AndrogensIBA
06/2011
1MHC class II transactivator proteinIBA
03/2011
1LigandsIBA
03/2011
1MicroRNAs (MicroRNA)IBA
01/2011
1Tirapazamine (SR 4233)IBA
01/2009
1Vascular Endothelial Growth Factor A (Vascular Endothelial Growth Factor)IBA
03/2008
1ProdrugsIBA
03/2008
1Benzoates (Benzoate)IBA
03/2008
1AminesIBA
02/2007
1src-Family KinasesIBA
02/2007

Therapy/Procedure

4Therapeutics
11/2023 - 05/2012
2Lasers (Laser)
03/2024 - 03/2008
2Drug Therapy (Chemotherapy)
11/2023 - 01/2021
1Cell Transplantation
12/2023
1Stem Cell Transplantation
11/2023
1Precision Medicine
08/2014
1Ambulatory Care (Outpatient Care)
03/2013
1Transcutaneous Electric Nerve Stimulation (TENS)
12/2012